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Life's Origin and the Biosphere: Lecture Notes on Natural Science 3, Lecture notes of Organic Chemistry

These lecture notes delve into the origins of life on earth, exploring the concept of the 'primordial soup' and the miller-urey experiment. They discuss essential components of life, including proteins, nucleic acids, organic phosphorus compounds, and cell membranes. The notes then introduce prokaryotes and eukaryotes, outlining their characteristics and providing examples. The cell theory is explained, followed by a detailed exploration of taxonomy and the classification of organisms into domains and kingdoms. The notes conclude with a discussion of the three domains: archaea, bacteria, and eukarya, highlighting their unique features and examples.

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Natural Science 3 Second LE Lecture Notes Bangga_05480
Lecture 2.1: The Biosphere
Life’s Origin
- Life first appeared about 3.5 to 3.9 Bya
- “Primordial Soup” by Charles Darwin
o warm water with right combinations of
chemical compounds with the right sources of
energy which could produce proteins
- Early environment:
o No free oxygen
o Nitrogen, Carbon dioxide, Methane, Ammonia
o High temperature
- Miller and Urey: Conducted experiments that replicated
the early conditions of the earth to produce amino acids
o set up: continuous sealed loop of tubes with all
the air removed
o introduced an atmosphere rich in CO2,
Nitrogen, ammonia, methane and water (but
no free oxygen)
o ocean flask that was being heated to generate
steam and to start the circulation of the
atmosphere
o used sparks to simulate lightning as the energy
source
o once the ammonia-methane-nitrogen- laden
steam moves through the lightning, they move
into a condenser which turns the steam back
into liquid and is moved back into the “ocean”
o in a few days, the ocean turned into an organic-
rich soup” and contained 4 of the 20 amino
acids used to create proteins
o experiments proved that it is easy to create
amino acids in nature
Essential Components of Life
- Proteins
o Strings of simple organic molecules amino
acids
o Fundamental building blocks of living things
o Functions:
1. Tissue formation
2. Provide patterns for laying down mineral
structures
3. Acts as enzymes
- Nucleic Acids
o Carry the genetic code necessary for making
copies of the cell
o Two types:
RNA
DNA
- Organic Phosphorus compounds
o Transform light energy or chemical fuel into the
energy required for cell activities
- Cell membrane
o A container
o Keeps the cell components together so they
can interact.
Simplest forms of Life
1. Prokaryotes
o Organisms that have their nucleic acids genes
floating in a cell without a nucleus
o E.g. Bacteria
- earliest known fossils: cyanobacteria (incorrectly known
as “blue green algae”), 3.4-3.5 Ga
- traces: stromatolites which form when cyanobacteria
formed sticky mats in shallow areas of the ocean and
are eventually covered with sediment. these sediment-
covered mats
- eventually build up and form mounds
2. Eukaryotes
o Cells contain a nucleus which contain the
nucleic acid genes
o Have additional structures: organelles
- the organelles were once free-living prokaryotes that
had come to live symbiotically within another cell and
eventually became a part of it (by Lynn Margulis)
Cell Theory
1. All living things are composed of one or more cell
2. The chemical reactions of living cells take place within
cells
3. All cells originate from pre0existing cells
4. Cells contain hereditary information, which is passed
from one generation to another.
- Each cell is self-contained and self- maintaining,
meaning it can take in nutrients, convert these nutrients
into energy, carry out specialized function and
reproduce
Taxonomy
- Naming and grouping of organisms
- From general to specific
Domain general grouping
Kingdom
Phylum
Class
Order
Family
Genus
Species specific grouping; organisms
that can interbreed to produce a fertile
offspring
Phylogenetic Trees and Cladograms
- Phylogenetic Tree
o Shows the relationship between different
organisms with respect to the evolutionary time
and the amount of change with time
- Cladograms
o shows only the relationship between different
organisms with respective to a common
ancestor
- The Domains:
1. Domain Archaea
2. Domain Bacteria
3. Domain Eukarya
a. Kingdom Protista
b. Kingdom Plantae
c. Kingdom Animalia
d. Kingdom Fungi
Domain Bacteria
- Prokaryotes
- Unlock organics from corpses and waste products
- Most dominant life form on earth
- Example:
o Cyanobacteria
Can photosynthesize and produce its
own food
- hard to find stromatolites because the older the rock, the
larger possibility for it to have been eroded long ago
- no evolutionary changes from 3.5 to 1.75 billion years
ago
- first eukaryotes appeared 1.75 bya
- first multi cellular life appeared 600 million years ago
- for 2 billion years (60% of life history), there was nothing
on Earth more complicated than a bacterium
- for 3 billion years (85 % of life history), there were only
single celled organisms
Domain Archaea
- extremophiles
- commonly found in deep-sea volcanic vents that spew
superheated, sulfur-rich water
- genetically simplest forms of life
- individual archaeans range from 0.1 to 15 micrometers
- and occur in various shapes (spherical, rod-shaped,
spiral, lobed or rectangular)
- since light does not reach these deep-sea vents,
archaeans rely on chemosynthesis instead of
photosynthesis
- Examples:
1. Pyrococcus furiosus
o “the rushing fireball”
o Found in marine sand surrounding sulfurous
volcanoes
o Anaerobic does not depend on oxygen
o Capable of living in temperatures ranging from
70 to 103oC and pH ranging from 5 to 9.
2. Halobacterium
o 5 microns
pf3
pf4
pf5
pf8
pf9
pfa

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Lecture 2.1: The Biosphere

Life’s Origin

  • Life first appeared about 3.5 to 3.9 Bya
  • “Primordial Soup” by Charles Darwin o warm water with right combinations of chemical compounds with the right sources of energy which could produce proteins
  • Early environment: o No free oxygen o Nitrogen, Carbon dioxide, Methane, Ammonia o High temperature
  • Miller and Urey: Conducted experiments that replicated the early conditions of the earth to produce amino acids o set up: continuous sealed loop of tubes with all the air removed o introduced an atmosphere rich in CO2, Nitrogen, ammonia, methane and water (but no free oxygen) o ocean flask that was being heated to generate steam and to start the circulation of the atmosphere o used sparks to simulate lightning as the energy source o once the ammonia-methane-nitrogen- laden steam moves through the lightning, they move into a condenser which turns the steam back into liquid and is moved back into the “ocean” o in a few days, the ocean turned into an organic- rich “soup” and contained 4 of the 20 amino acids used to create proteins o experiments proved that it is easy to create amino acids in nature Essential Components of Life
  • Proteins o Strings of simple organic molecules – amino acids o Fundamental building blocks of living things o Functions:
  1. Tissue formation
  2. Provide patterns for laying down mineral structures
  3. Acts as enzymes
  • Nucleic Acids o Carry the genetic code necessary for making copies of the cell o Two types: ▪ RNA ▪ DNA
  • Organic Phosphorus compounds o Transform light energy or chemical fuel into the energy required for cell activities
  • Cell membrane o A container o Keeps the cell components together so they can interact. Simplest forms of Life
  1. Prokaryotes o Organisms that have their nucleic acids genes floating in a cell without a nucleus o E.g. Bacteria
  • earliest known fossils: cyanobacteria (incorrectly known as “blue green algae”), 3.4-3.5 Ga
  • traces: stromatolites which form when cyanobacteria formed sticky mats in shallow areas of the ocean and are eventually covered with sediment. these sediment- covered mats
  • eventually build up and form mounds
  1. Eukaryotes o Cells contain a nucleus which contain the nucleic acid genes o Have additional structures: organelles
  • the organelles were once free-living prokaryotes that had come to live symbiotically within another cell and eventually became a part of it (by Lynn Margulis) Cell Theory
  1. All living things are composed of one or more cell
  2. The chemical reactions of living cells take place within cells
  3. All cells originate from pre0existing cells
  4. Cells contain hereditary information, which is passed from one generation to another.
  • Each cell is self-contained and self- maintaining, meaning it can take in nutrients, convert these nutrients into energy, carry out specialized function and reproduce Taxonomy
  • Naming and grouping of organisms
  • From general to specific Domain – general grouping Kingdom Phylum Class Order Family Genus Species – specific grouping; organisms that can interbreed to produce a fertile offspring Phylogenetic Trees and Cladograms
  • Phylogenetic Tree o Shows the relationship between different organisms with respect to the evolutionary time and the amount of change with time
  • Cladograms o shows only the relationship between different organisms with respective to a common ancestor
  • The Domains:
  1. Domain Archaea
  2. Domain Bacteria
  3. Domain Eukarya a. Kingdom Protista b. Kingdom Plantae c. Kingdom Animalia d. Kingdom Fungi Domain Bacteria
  • Prokaryotes
  • Unlock organics from corpses and waste products
  • Most dominant life form on earth
  • Example: o Cyanobacteria ▪ Can photosynthesize and produce its own food
  • hard to find stromatolites because the older the rock, the larger possibility for it to have been eroded long ago
  • no evolutionary changes from 3.5 to 1.75 billion years ago
  • first eukaryotes appeared 1.75 bya
  • first multi cellular life appeared 600 million years ago
  • for 2 billion years (60% of life history), there was nothing on Earth more complicated than a bacterium
  • for 3 billion years (85 % of life history), there were only single celled organisms Domain Archaea
  • extremophiles
  • commonly found in deep-sea volcanic vents that spew superheated, sulfur-rich water
  • genetically simplest forms of life
  • individual archaeans range from 0.1 to 15 micrometers
  • and occur in various shapes (spherical, rod-shaped, spiral, lobed or rectangular)
  • since light does not reach these deep-sea vents, archaeans rely on chemosynthesis instead of photosynthesis
  • Examples:
  1. Pyrococcus furiosus o “the rushing fireball” o Found in marine sand surrounding sulfurous volcanoes o Anaerobic – does not depend on oxygen o Capable of living in temperatures ranging from 70 to 103oC and pH ranging from 5 to 9.
  2. Halobacterium o 5 microns

o Can survive in environment with salinity of 25% NaCl.

  1. Methanocaldococcus jannaschii o Thrives in habitats with pressures of up to 200 atm and a temperature range of 48 to 94oC o Survives on carbon dioxide, hydrogen, and few mineral salts o Cannot tolerate oxygen ▪ Obligate anaerobic **Domain Eukarya
  2. Kingdom Protista** o Mostly single-celled eukaryotes o Does not fit into any other major taxonomic groups o Some are photosynthetic (algae) and some feed like animals (protozoans) o Some are both plant-like and animal-like o Example:
  3. Zooxanthellae ▪ Single-celled algae that convert sunlight into energy for corals, imparts huge hues of oranges, reds, purples, and yellows, and help them build reef structures.
  4. Dinoflagellates ▪ Algae ▪ Causes red tide
  5. Coccolithophores ▪ Calcareous algae – CaCO 3 ▪ May form limestones ▪ 15 to 100 microns ▪ Found highly in tropics to higher latitudes (7o)
  6. Diatoms ▪ Siliceous algae – SiO 2 ▪ May form chert ▪ 20 to 200 microns ▪ Restricted to shallow surface waters (<100 m) ▪ Far more diverse and abundant in freshwaters ▪ Cannot be exposed to 50 oC and alkaline conditions ▪ Photosynthetic
  7. Foraminiferans ▪ Calcareous protozoans ▪ Also forms limestone ▪ Can be planktonic or benthic ▪ Useful tool in determining paleoclimates due to their sensitivity to the temperature and and chemistry of the open ocean
  8. Radiolarians ▪ Siliceous protozoans ▪ Also forms chert 2. Kingdom Fungi o Eukaryotes which may exist in nature as either single-celled or multi-celled organisms or both at different points of their life cycle. o Avascular ▪ No specialized respiratory, digestive, or transport systems beyond the hyphae
  • hyphae - stalk of mushrooms; thread-like filaments that make up a multicellular fungus and release enzymes to absorb nutrients from food sources o usually found as opportunistic saprophytes or in some parasitic or symbiotic relationship with plants ▪ saprophytes – meaning they live on dead organic matter o digest food outside their bodies ▪ they release enzymes into the surrounding environment breaking down organic matter into a form the fungus can absorb. o Important decomposers ▪ along with bacteria, they are the primary decomposers of organic matter in almost all terrestrial ecosystems o Most vascular plants could not grow without the symbiotic fungi that inhabit their roots and supply essential nutrients ▪ vascular- contain xylem and phloem for transport of water and food o Lichens – symbiotic communities of fungi and algae 3. Kingdom Plantae o Capable of photosynthesis A. Nonvascular Plants:
  1. Liverworts ▪ First plants to make the transition from sea to land 400 Mya ▪ Grow on damp forest floor
  2. Hornworts ▪ Do not have any leaves or stem, but are attached to the ground by rhizoids
  3. Mosses ▪ Found throughout the world in moist shady locations ▪ Aid in soil erosion control by providing surface cover and by absorbing water
  4. Ferns ▪ Seedless vascular plants B. Vascular Plants
  5. Gymnosperms ▪ Non-flowering plants ▪ seed-producing ▪ First appeared 390 Mya ▪ Examples:
  • Gingko
  • Pine trees
  1. Angiosperms ▪ Flowering plants ▪ First appeared 125 Mya o the evolution of the seed allows plants to escape the limitation of growing in very moist environments o Several layers of hardened tissue prevent desiccation, freeing reproduction from the need for a constant supply of water. 4. Kingdom Animalia o Eukaryotes o Multicellular o Heterotrophic ▪ Consume food by consuming other living organisms Kingdom Animalia: Phylum Porifera
  • No true tissues; lack muscles, nerves and internal organs
  • Primitive sessile, mostly marine, water dwellers, filter feeders
  • Simplest of animals
  • Pump water through their bodies to filter out particles of food matter Kingdom Animalia: Phylum Cnidaria
  • Basic body shape consists of a sac containing a gastrovascular cavity with a single opening that serves a both mouth and anus
  • Exhibit radial symmetry
  • Presence of stinging cells called cnidocytes which are arranged in circles around their mouth
  • Pump water through their bodies to filter out particles of food matter
  • Stinging cells are used for feeding
  • includes corals, jellyfish, sea anemones
  • stinging organelle – nematocyst Kingdom Animalia: Phylum Ctenophora
  • also known as comb jellies, sea gosberries and sea walnuts
  • like cnidarians but lacks stinging cells

Archaeopteryx - link between birds and dinosaurs E. Mammals o Endotherms o Females carry young in a uterus during development, nourishing them through a placenta, and give birth to live young o All females have a mammary gland that secrete milk o Have hair

  1. Monotremes o Lays egg
  2. Marsupials o pouch where their young grow and develop, absorb nutrients from the yolk of their ovum
  3. Placentals o give birh to fully-developed live young ---

Lecture 2. 2 : Relative Dating

  • Prior to the discovery of radioactivity, geologists have no reliable method of giving specific dates to geologic events and had to rely on relative dating techniques
  • Relative Dating o Task of placing rock units and geologic events in their proper sequence. **Fundamental Principles of Relative Dating
  1. Law of Superposition** o In an undeformed sequence of sedimentary rocks, each bed is older than the one above it.
  2. Principle of Cross-cutting Relationships o Any geologic feature that crosses other layers of rock must be younger than the material it cuts across. o When a fault cuts through other rock, the fault is younger than the rock it breaks o When magma intrudes and crystallizes to form an igneous intrusion, we know that the intrusion is younger than the rocks were intruded. ▪ sill - parallel to the beds ▪ dike - cuts across the layers

C-B-A-D

C-B-A-E-D

Is Dike A older or younger than the sandstone layer?

  • Younger Did Fault A occur before or after the conglomerate bed was deposited?
  • Before Is Dike B older or younger than Fault B?
  • Younger Is Dike B and its associated sill younger or older than Dike A?
  • Older Was the batholith emplaced before or after movement occurred along fault B?
  • After Was the batholith emplaced before or after Dike B was formed?
  • Before
  1. Law of Original Horizontality o Layers of sediment are generally deposited in a horizontal position. o if we observe rock layers that are horizontal, we conclude that they are undisturbed. o When strata are folded or inclined at a steep angle, we conclude that they must have been moved into that position by crustal disturbances sometime after their deposition.
  1. Principle of Fossil Succession o Groups of fossils, called fossil assemblage, proceed one another in a regular and determinable manner.
  2. Conformities o When rocks are deposited without interruption, we say the layers are conformable. o When rocks are deposited with interruptions, we say the layers are unconformable o Unconformities are usually marked by erosional surfaces o Unconformities represent periods where deposition ceased, erosion removed previously-formed rocks, and then deposition resumed. o how do unconformities happen? o deposition usually occurs underwater. Particles that are suspended in water tend to settle as the energy of the water wanes. o when the rock layers are uplifted, they will not be covered by water anymore and they will be exposed to erosional agents. o uplifting of rocks occurs by folding, faulting, etc. a. Angular Unconformity ▪ Older strata dip at an angle different from that of the younger beds b. Disconformity ▪ The strata on the both side of the unconformity are parallel

James Ussher

  • 1581 - 1656
  • The Annals of the Old Testament Deduced from the First Origin of the World
  • Creation of the earth was completed at sunset of the 22 nd^ of October, 4004 BC so that the first day of creation was on Sunday 23rd.
  • 5,658 years old
  • Archbishop
  • John Lightfoot conceded to James Ussher's calculations and was thus regarded as the most accurate date for the start of Creation John Ray
  • 1670s
  • Observed a bed of sand 100 ft deposited on top of cockleshells at Amsterdam. This discovery meant that 100 ft of sediment had been deposited after the cockles had been alive.
  • Determined the rate at which sand is deposited.
  • It would have taken at least 10,000 years for the sand layers to be deposited.
  • divided the depth of the sediments by their measured rate of accumulation
  • By making a simple division he was also implicitly assuming that the average rate of deposition did not change much
  • This was "a strange thing," John Ray wrote, "considering [that the age of the Earth] according to the usual account is not yet 5,600 years." Isaac Newton
  • 1680s
  • Scientists believe that the Earth had once been molten.
  • How long would a molten Earth take to cool to present day temperature? o “A globe of red-hot iron equal to our earth…would scarcely cool…in 50,000 years” Georges de Buffon
  • 1760
  • Made actual measurements of cooling times of small solid iron balls
  • He then extrapolated to the much larger size of the earth and concluded that earth’s age must be at least 75, years old. Lord Kelvin
  • 1862
  • Quantified Buffon’s early ideas of an originally molten earth which cooled to its present state as the result of the dissipation of heat over time.
  • Two assumptions:
  1. Initial molten Earth
  2. No additional source of heat
  • Parameters:
  1. Rocks melt at ~3,900oC
  2. Assumed a geothermal gradient of ~0.56^0 C/50ft depth.
  3. Derived mathematical estimates for thermal conductivity.
  • “So that…at a depth of 50 – 100 miles the interior would’ve still be molten when magma was derived
  • 20 - 40 million years old
  • His calculations did not account for heat produced via radioactive decay (a process hen unknown to science) or, more significantly, convection inside the Earth, which allows more heat to escape from the interior to warm rocks near the surface. John Joly
  • 1899
  • Calculated the age of the Earth by salinity of seawater. o calculated the rate at which salt is being added to the oceans by rivers
  • Three assumptions:
  1. No dissolved salts initially
  2. Rivers provide current salt content
  3. Volume of oceans are constant
  • 90 - 100 million years old John Joly and Ernest Rutherford
  • 1913
  • Made the first calculations of a rock layer based on its radioactive decay
  • Leinster granite
  • 400 million years old
  • upon the discovery of radioactive decay, Joly hypothesized that these elements could be used to determine the age of the earth
  • they calculated the base of the Devonian period when that granite was formed Arthur Holmes
  • Uranium isotopes in Archaean rocks 1913 : 1.6 Ga 1927 : 3.0 Ga 1940s : 4.5 Ga

Lecture 2. 4 : Absolute Dating

Absolute Dating

  • Provides an absolute age for rocks using radioactivity and other methods
  • Allows us to accurately determine the numerical dates for rocks that represent important events in Earth’s vast history
  • Arranging the rocks from oldest to youngest using relative dating does not really give us the number of years it took to form the whole rock suite. The Atom
  • Composed of electrons, neutrons, and protons
  • The nucleus consists of protons and neutrons
  • Proton (+)
  • Electron (-)
  • Neutron (0)
  • neutron is neutral because it contains a positive and negative charge, so they will cancel out
  • electrons orbit the nucleus
  • Atomic Number o Number of protons o Examples: ▪ Atomic number of zinc = 30 ▪ Atomic number of carbon = 6
  • Mass Number o Number of protons plus neutrons
  • practically all of an atom's mass is in its nucleus which indicates that the electrons practically have no mass
  • essentially, the mass number is the number of particles within the nucleus
  • Isotopes o Same atomic number, different mass number o same number of protons but different number of neutrons o Examples: ▪ C- 12
  • protons: 6
  • neutrons: 6 ▪ C- 14
  • protons: 6
  • neutrons: 8 ▪ U- 238
  • Protons: 92
  • Neutrons: 146 Radioactive Decay
  • The nuclei of some isotopes are unstable and spontaneously change to a different element.
  • isotopes go through radioactive decay to arrive at its most stable daughter product
  • Alpha Emission o Emission of an alpha particle o the charge of an alpha particle is positive o for each alpha particle emitted, the mass number decreases by 4; the atomic number decreases by 2
  • Beta Emission o Emission of a beta particle from a neutron or electron that was part of a neutron.

o When a beta particle is emitted from the neutron, the neutron becomes a proton o the charge of a beta particle is negative o for each beta particle emitted, the mass number is not affected o the atomic number increases by 1 due to the addition of a proton

  • Electron Capture o An orbital electron is captured by the nucleus o The captured electron combines with a proton to form a neutron o when an electron is captured by the nucleus, the mass number is not affected the atomic number decreases by 1 Examples: A. Alpha Emission B. Beta Emission C. Electron Capture ^A ^B When Uranium-238 decays, it emits 8 alpha particles and 6 beta particles before finally become the stable daughter product. What is – A. The atomic number of the daughter product? atomic number = 92 - (8x2) + 6 = 82 B. The mass number of the daughter product? mass number = 238 - (4x8) = 206 The Uranium-238 Series
  • Radioactivity is a good “clock” for determining reasonably accurate numerical dates because the rate of decay for each radioactive isotope is constant and can actually be accurately measured.
  • Half-life o Rate of radioactive decay for an element o Time required for ½ of the nuclei of a sample to decay. ^parent:daughter ratio 1 - 1: 2 - 1: 3 - 1: 4 - 1: 5 - 1:
  • the percentage of radioactive atoms that decay is always fifty percent but the actual number of atoms decaying decreases
  1. What is the age of a sample if the parent-daughter ratio is 1:1 and half-life is 5 million years? o age= 1x 5 million years = 5 million years
  2. What is the age of a sample if the parent-daughter ratio is 1:7 and the half-life is 5 million years? o age= 3x 5 million years = 15 million years
  3. What is the approximate age of an igneous rock that contains only ¼ of its original Potassium-40? o 1/4 = 2 half lives o 2x 1.3 billion years = 2.6 billion years
  • A sedimentary rock can seldom be dated directly by radiometric means because the particles composing sedimentary rocks come from rocks of diverse ages.
  • The crystals in an igneous rock all form at about the same time
  • Numerical dates for sedimentary layers are usually determined from their relationship to igneous rocks From the figure above, what is the age of the “Shale” layer?
  • 370 - 400 Million years old From the figure above,
  1. the age of layer K is younger than ___ but older than ___.

o In areas where there are no reworking currents o Little or no diagenetic alteration

  • These can be:
    1. Unaltered remains o They retain their original composition and structure by freezing, mummification, encapsulation in amber and tar. o Preserved with most of their tissues intact
    2. Altered remains o Some changes in composition or structure compared to original material by permineralization, recrystallization, replacement, carbonization. o Permineralization ▪ Addition of minerals to pores and cavities in shells and bones o Recrystallization ▪ Change in crystal structure o Replacement ▪ One chemical compound replaces another o Carbonization ▪ Compression, heat, and pressure drive away lighter, more volatile atoms, leaving behind and film of carbon ▪ Most common for plants and insects o Molds and casts ▪ Molds are formed when an organism leaves an impression in the sediments ▪ Casts are formed when sediments fill a mold and thus take on the shape of the original organism Fossil Record
  • Record of ancient life preserved as fossils in rocks
  • Incomplete due to: o Bacterial decay o Physical processes o Scavenging o Metamorphism
  • In spite all these, fossils are quite common Fossils and Telling Time
  • William Smith (1769-1839) o Realized that fossils in the rocks followed the superposition principle o Discovered that sequences of fossils are consistent from area to area. o Principle of Fossil Succession

Lecture 2. 6 : Correlation and Geologic Time

Fossils and Telling Time

  • William Smith (1769-1839) o English civil engineer o Independently discovered Steno’s principle of superposition o Realized that fossils in the rocks followed the same principle o Discovered that sequences of fossils, especially groups of fossils, are consistent from area to area, thereby discovering a method of relatively dating sedimentary rocks at different locations Principle of Fossil Succession
  • Using superposition, Smith was able to predict the order in which fossils would appear in rocks not previously visited o lead to the principle of fossil succession
  • Principle of fossil succession o holds that fossil assemblages (groups of fossils) succeed one another through time in a regular and determinable order
  • Fossils also formed through time, but because different organisms existed at different times, fossil assemblages are unique
  • Why not simply match up similar rock types? o because the same kind of rock has formed repeatedly through time Correlation
  • Correlation is the process of matching up rocks in different areas
  • There are two types of correlation: o lithostratigraphic correlation ▪ simply matches up the same rock units over a larger area with no regard for time ▪ basic unit: formation – a mappable body of rock with distinctive upper & lower boundaries ▪ Limitation: (a) Because most rock units of regional extent are time transgressive we cannot rely on lithostratigraphic correlation to demonstrate time equivalence (b) Changing lateral relationships in sedimentary rock units over large geographic areas is a problem for lithostratigraphic correlation o time-stratigraphic correlation ▪ Some physical events of short duration are also used to demonstrate time equivalence:
  • distinctive lava flow ▪ would have formed over a short period of time
  • ash falls ▪ take place in a matter of hours or days ▪ may cover large areas ▪ are not restricted to a specific environment ▪ Absolute ages may be obtained for igneous events using radiometric dating ▪ demonstrates time-equivalence of events ▪ most common unit: system – rocks formed during a particular interval of geologic time ▪ Correlation of rock units according to rock age (i.e., based on fossil assemblages or age relationships with other rock layers of known ages) Lateral Relationships of Sedimentary Rocks Recall: Principle of lateral continuity
  • Layers of sediment extend outward in all directions until they terminate
  • Abruptly o at the edge of a depositional basin o where it is eroded o where it is cut by faults
  • gradually o where a rock layer becomes thinner until it pinches out o where it splits into thinner layers, each of which pinches out (intertonguing) o through lateral gradation, as its composition and/or texture becomes increasingly different Time Equivalence
  • Time-stratigraphy is able to correlate rock units even over large distances o requires fossils
  • For all organisms now extinct, their existence marks two points in time o their time of origin o their time of extinction
  • The total time of existence of a particular fossil group, a species, or genus is its geologic range
  • Most useful are fossils that are o Abundant o easily identified o geographically widespread o with short geologic range Guide Fossils
  • The brachiopod Lingula is not useful because, although it is easily identified and has a wide geographic extent, o it has too large a geologic range o The brachiopod Atrypa and trilobite Paradoxides are well suited for time- stratigraphic correlation o because of their short ranges o Atrypa and Paradoxides are guide fossils because they are useful in time-stratigraphic correlation Eons
  • are the largest intervals of geologic time and are hundreds of millions of years in duration
  • Phanerozoic Eon– “visible life”; sedimentary rocks in this eon contain an abundance of Fossils Eras
  • Subdivisions of Eons
  • Era names refer to important differences in dominant life-forms
  • Very significant events in Earth's history are used to determine the boundaries of the eras Periods
  • Eras are subdivided into periods. The events that bound the periods are widespread in their extent but are not as significant as those which bound the eras.
  • The changing fossil record also played an important part in establishing each of the periods. Epochs
  • Finer subdivisions of time are possible, and the periods of the Cenozoic are frequently subdivided into epochs. Subdivision of periods into epochs can be done only for the most recent portion of the geologic time scale. This is because older rocks have been buried deeply, intensely deformed and severely modified by long-term earth processes. As a result, the history contained within these rocks cannot be as clearly interpreted.
  • Epochs of other periods are just termed Early, Middle and Late. Relative Geologic Time Scale
  • Early geologists studying the earth interpreted three episodes of rock formation: Primary (igneous and metamorphic), Secondary (sedimentary), and Tertiary (unconsolidated). Note: Quaternary was added later.
  • Investigations of rocks by naturalists between 1830 and 1842 based on superposition and fossil succession o resulted in the recognition of rock bodies called systems o and the construction of a composite geologic column that is the basis for the relative geologic time scale Dividing Earth’s History into Time Intervals
  • Geologists have divided Earth's history into a series of time intervals. These time intervals are not equal in length like the hours in a day. Instead the time intervals are variable in length. This is because geologic time is divided using significant events in the history of the Earth.
  • Examples of Boundary "Events" o For example, the boundary between the Permian and Triassic is marked by a global extinction in which a large percentage of Earth's plant and animal species were eliminated. o Another example is the boundary between the Precambrian and the Paleozoic, which is marked by the first appearance of animals with hard parts.
  • Since radiometric dating techniques work on igneous and some metamorphic rocks, but not generally on sedimentary rocks, this is not so easy to determine
  • Think of relative time as physical subdivisions of the rock found in the Earth's stratigraphy, and absolute time as the measurements taken upon those to determine the actual time which has transpired.
  • Absolute time measurements can be used to calibrate the relative time scale, producing an integrated geologic or "geochronologic" time scale. Indirect Dating
  • Absolute ages of sedimentary rocks are most often found by determining radiometric ages of associated igneous or metamorphic rocks
  • Combining thousands of absolute ages associated with sedimentary rocks of known relative age gives the numbers on the geologic time scale Five Major Extinction Events
  1. Ordovician-Silurian, 444 million years ago, 86% of species lost o Graptolites, like most Ordovician life, were sea creatures. They were filter-feeding animals and colony builders. Their demise over about a million years was probably caused by a short, severe ice age that lowered sea levels, possibly triggered by the uplift of the Appalachians. The newly exposed silicate rock sucked CO2 out of the atmosphere, chilling the planet. o Some theories suggest that the Earth was covered in such a vast quantity of plants that they removed too much carbon dioxide from the air which drastically reduced the temperature. o Trilobites, brachiopods, and graptolites died off in large numbers but interestingly, this did not lead to any major species changes during the next era.
  2. Late Devonian, 382 million years ago, 75% of species lost o Trilobites were the most diverse and abundant of the animals that appeared in the Cambrian explosion 550 million years ago. Their great success was helped by their spiky armor and multifaceted eyes. They survived the first great extinction but were nearly wiped out in the second. The likely culprit was the newly evolved land plants that emerged, covering the planet during the Devonian period. Their deep roots stirred up the earth, releasing nutrients into the ocean. This might have triggered algal blooms which sucked oxygen out of the water, suffocating bottom dwellers like the trilobites. o Volcanic ash is thought to be responsible for cooling earth’s temperatures which killed off the spiders and scorpion-type creatures that had made it on land by this time. A distant amphibian cousin, elpistostegalians, had also ventured onto land but became extinct. Vertebrae did not appear on land again until 10 million years later, the ichthyostegalians from which we all evolved. If the late Devonian extinction had not occurred, humans might not exist today.
  3. Permian-Triassic, 251 million years ago, 96% of species lost o Known as “the great dying”, this was by far the worst extinction event ever seen; it nearly ended life on Earth. The tabulate corals were lost in this period – today’s corals are an entirely different group. What caused it? A perfect storm of natural catastrophes. A cataclysmic eruption near Siberia blasted CO into the atmosphere. Methanogenic bacteria responded by belching out methane, a potent greenhouse gas. Global temperatures surged while oceans acidified and stagnated, belching poisonous hydrogen sulfide. “It set life back 300 million years,” says Schmidt. Rocks after this period record no coral reefs or coal deposits. o Life today descended from the 4% of surviving species. After this event, marine life developed a complexity not seen before and snails, urchins, and crabs emerged as new species.
  4. Triassic-Jurassic, 199-214 million years ago, 80% of species lost