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Innate and Adaptive Immunity: A Comprehensive Overview, Schemes and Mind Maps of Immunology

A detailed and comprehensive overview of the innate and adaptive immune systems. It covers key components, mechanisms, and processes involved in immune responses, including inflammation, antiviral defense, and antigen presentation. The document also explores the roles of various immune cells, such as macrophages, dendritic cells, natural killer cells, and lymphocytes, in protecting the body from pathogens and maintaining immune homeostasis.

Typology: Schemes and Mind Maps

2023/2024

Available from 12/30/2024

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The Immune System
(Protection from infectious pathogens)
Responses of the
Immune System
1. Hypersensitivity Disorder:
exagerrated response that
may cause tissue injury.
2. Tumor Immunity: response
of the body against cancer
cells.
3. Rejection reaction on
Tissue Transplants:
response of the immune
system (T cells and
antibodies) against graft
antigens.
4. Autoimmunity: mistaken
response of the immune
system towards ones
antigens— recognizes self
antigens as FOREIGN
Mechanisms of Immunity
Innate Immunity
Adaptive Immunity
CHARACTERISTICS
Natural/ native/ intrinsic
(always present)
1st line of defense
(immediate)
Major Reaction:
INFLAMMATION
Detects PAMPs
No memory or fine
antigens
CHARACTERISTICS
Acquired/Specific (silent
immunity)
Delayed defense
mechanisms (may take
time to respond)
Major Stimuli: Microbes
and Foreign Bodies
Has memory (anamnestic
response) or fine
antigens
COMPONENTS
EPITHELIAL BARRIER
Mechanical barrier
Skin epithelium and mucosal membranes
PHAGOCYTES
Phagocytosis in tissues
From YOLK SAC or FETAL LIVER
Macrophages (tissues):
-Monocytes (blood)
-Kupffer cells ( liver)
-Microglia (brain)
-Alveolar macrophages/ Dust cells
(lungs)
Polymorphonuc lear cells (neutrophil s)
DENDRITIC CELLS
ANTIGEN-PRESENTING CELL
-Presents only to T cells and are
not involved in the destruction of
microbes
Present in: epithelium, lymphoid organs
(germinal center) and most tissues
Activati on = cytokine secretion
INNATE LYMPHOID CELLS (ILC)
Activate d by cytokines and facilitate
the production of more cytokines
No T-cell antigen receptors— cannot
respond to antigens
Present in: Lymphoid tissues (MALT)
GROUPS (based on patterns of
cytokine production):
-ILC1: IFN-gamma
-ILC2: Type-2 cytokines
-ILC3: IL-22 and IL-17
NATURAL KILLER CELLS
TYPE OF ILC (Phenotypic, developmental,
and functional properties overlap with ILC1
and ILC3)
Early protection against viruses, tumor
cells, and intracellular bacteria
Recognizes and kills pathogen that are IgG-
coated (has receptors for the Fc tail of IgG
EPITHELIAL AND ENDOTHELIAL CELLS
Produce defensins (antimicrobial)
PLASMA PROTEINS
Proteins of complement system
-Mannose binding lectin and CRP
-Alternative and lectin pathways
(involved in innate immunity)
-Classical Pathway (involved in
adaptive immunity and antigen-
antibody formation)
END RESULT: Activation of Membrane
Attack Complex (MAC )
MAST CELLS
Found in: TISSUES
Basophil (circulation) counterpart
Produces mediators for
inlammation (histamine)
LUNG SURFACTANTS
Prevents alveolar collapse
(atelectasis) among newborns
Protection against inhaled
microbes
COMPONENTS
Reactions of Innate
Immunity
Inflammation (major)
-Produce cytokines
(interleukins) and
complement
products
-Signal repair of
damaged cells
-Recruits leukocytes
to destroy microbes
and ingest
damaged cells
Antiviral Defense
-Produce Type I IFN
and antiviral
cytokines (NK
cells)
-Type I IFN: act on
infected and
uninfected cells
and activate
enzymes that
degrade viral
nucleic acid and
inhibits replication
Stimulate Adaptive
Immune Response
-Initiates the more
powerful immune
response in case
the innate immunity
fails to eliminate
the antigen.
CELLULAR RECEPTORS
PATHOGEN ASSOCIATED MOLECULAR
PATTERNS (PAMPs)
Found and shared among related microbes.
Recognized by PRR-bearing cells and epithelial cells
DAMAGE ASSOCIATED MOLECULAR
PATTERNS (DAMPs)
Released by injured and necrotic cells.
Endogenous danger molecules
PATTERN RECOGNITION RECEPTORS (PRRS)
Proteins capable of recognizing molecules found in pathogens
Found in all cellular compartments where microbes may be
present.
Classifications:
-Plasma membrane receptors: extracellular microbes
-Endosomal receptors: intracellular/ ingested microbes
-Cytosolic receptors: cytoplasmic microbes
C-TYPE LECTIN RECEPTORS (CLRs)
Detect fungal glycans
RIG-LIKE RECEPTORS (RLRs)
Stimulate production of antiviral cytokines
CYTOSOLIC RECEPTORS
Detect microbial DNA (from viruses).
Activate STING (stimulator of interferon genes)
pathways— production of IFN-ą (antiviral)
INTERFERONOPATHIES = mutation/ increased IFN
production
PLASMA MEMBRANE G PROTEIN-COUPLED
RECEPTORS
Chemotaxis
MANNOSE RECEPTORS
Recognize microbial sugars
Induce phagocytosis of microbes
TOLL-LIKE RECEPTORS (TLRs)
LOCATION: PLASMA MEMBRANE AND ENDOSOME
10 TLRs in mammals— each recognizes a different set of
molecules.
1st recognized receptor in Drosophila
Induces activation of transcription factors
-NF-KB (Nuclear Factor Kappa B):
-(1) synthesis and secretion of cytokines;
-(2) expression of adhesion molecules;
-(3) both leads to recruitment and activation
of leukocytes to the site of inflammation
-IRFs (Interferon Regulatory Factors): for
production of antiviral cytokines and Type I IFN
“Loss of function” mutation: problems with antiviral and
antimicrobial functions of transcription factors
NOD-LIKE RECEPTORS (NLRs)
LOCATION: CYTOSOL
Recognizes:
-Necrotic cell products (uric acid and ATP)
-Ion disturbances (K+ loss)
-Microbial products
Signals inflammasome
INFLAMMASOME
LOCATION: CYTOSOL
Cytosolic multiprotein complex
Components:
-NLRP3: activates the inactive caspase-1
-Adapter
-Caspase-1: cleave precursor of IL-1
IL-1: induces fever and further leukocyte recruitment
NLR-Inflammasome Pathway
-Periodic Fever Sy ndrome/ Autoinflammatory Syndrome
Not autoimmune; unregulated production of IL-1
Causes: “Gain of function” (NLR mutation) and
“Loss of function” (Inflammasome mutation)
Management: IL-1 antagonist
-Gout
-Obesity associated with T2DM and atherosclerosis
Explanation of the picture:
Normal cells: no ligand
expression ; inhibitory rec eptor
attached to MHC I = no
activation of NK cells
Infected/tumor cells: expressed
ligands on the surface and
bound to activating receptor
(green color); inhibitory receptor
removed = activation of NK cells
and killing of infected cells
Lymphocytes and antibodies
from plasma cells (B cells)
LYMPHOCYTES
Naive/Immunologically
inexperienced
Mature lymphocytes that havent
encountered an antigen YET.
LOCATION: PERIPHERY of primary
lymphoid organs and primary
follicles (without germinal centers)
in lymph nodes
Effector Cells
For elimination of microorganism
Memory Cells
Undergone activation BEFORE
Under the state of heightened
awareness (react rapidly and
strongly in cases of microbial
re-encounter)
B Lymphocyte
Production of antibodies
(plasma cells)
Neutralization of microbes
Phagocytosis
Complement activation
T Lymphocyte
Major lymphocyte in splenic
periarteriolar sheaths and
lymph node interfollicular
zones
Sense peptide fragments
bound by MHC ONLY.
Helper T Lymphocyte (CD4)
Binds to MHC Class II (APC cells only)
50-60% of T cells
Releases cyt okines and induces in flammation
Activat es macroph ages (phag ocytes)
Activation (proliferation and differentiation) of T and B lymphocytes
Cytotoxic T Lymphocyte (CD8)
Binds to MHC Class I (seen in all nucleated cells + platelets)
40% of T cells
Also secrete cytokines
Direct killing and lysis of infected/tumor cells and microbes
Regulatory T Lymphocyte (CD4)
SUPPRESSION of immune system
Prevention of autoimmunity
Lymphocyte Diversity
Lymphocytes express
receptors specific for different
types of antigens and are fully
matured prior to exposure to
antigen
Clone: lymphocytes of the
SAME SPECIFICITY (express
the same antigen receptors)
Clonal selection: process by
which a single lymphocyte
bearing a receptor specific to
a particular antigen is selected
to proliferate and form clones.
Antigen Receptor Diversity
Recombination-activating genes
(RAG-1 and RAG-2): encode for
enzymes found in developing
lymphocytes (only contained by T and B
cell)
-Defects in RAG proteins = failure to
generate mature lymphocytes
Recombined TCR or Ig genes: marker
to differentiate T- or B-cell lineage cells
Lymphomas:
-Polyclonal (non-neoplastic or
reactive): combination of CD3 (T
cells) and CD20 (B cells)
-Monoclonal (neoplastic): entire
lymph node is composed of one cell
type only (CD3 OR CD20)
T Lymphocytes
Thymus-derived
60-70% of circulating lymphocytes
Located in T cell zones of
secondary lymphoid organs:
Paracortex (LN) and spleen
Recognizes a specific antigen by
means of antigen-specific TCR
CD4, CD8, CD28, and integrins:
expressed by T cells and assist the
TCR complex in functional
responses
TCR COMPLEX: has 6 polypeptide
chains
-Alpha and beta chains
-Variable and constant regions
Alpha-beta TCR: recognize peptide
antigens presented by MHC
molecules.
CD3 complex: epsilon, gamma,
delta proteins
Zeta chain dimer: involve in the
signal transduction into the T cell
once antigen binds to the TCR
Gamma-delta TCR: recognizes
peptides, lipids, and small
molecules without requiring for
display by MHC proteins.
CD28
Receptor for c o-stimulators
that are induced on APCs
B Lymphocytes
Bone marrow-derived
10-20% of circulating lymphocytes
Located in peripheral lymphoid
tissues such as lymph nodes,
spleen, and MALT
Activation = differentiation into
plasma cells = secretion of
antibodies = mediation of humoral
immunity
5 Classes of Antibodies
-IgG (able to cross the placenta)
-IgM (largest— a pentamer)
-IgA (found in secretions and serum)
-IgE (mostly located in mast cells)
-IgD (found on B cell surface)
BCR COMPLEX: antigen recognition
receptor for B cells.
Comprised of:
Membrane Immunoglobulin (IgM,
IgG, IgA): for antigen and signaling
proteins recognition
Signaling proteins (Igą/CD79a, Igß/
CD79b): attached to BCR
Type 2 complement receptor (CR2/
CD21): for B cell activation and
recognition of complement
breakdown products deposited on
microbes
-Helps EBV enter and infect the
cell
CD40: receives signals from helper
T cells for activation of B cells.
TYPES OF ADAPTIVE
IMMUNITY
HUMORAL
-Tar ge t s extracellular
pathogens and their toxins
-Mediated by antibodies
produced by B cells
CELL-MEDIATED
-Tar ge t s intracellular
pathogens and tumor
infected cells
-Mediated by T cells
Antigen-Presenting
Cells
Dendritic Cells
Interdigitating DCs
Most important APC for
initiating T-cell
responses
Langerhans cells:
immature DC in
epidermis
Brings antigen to
paracortex and follicular
area/germinal center of
lymphoid organs
LOCATIONS: skin
epithelium and tissue
interstitium
Receptors: TLRs and C-
type lectins
Express high levels of
MHC
Cells with Dendritic-
Like Morphology
Plasmacytoid DCs
-Has plasma cells
resemblance
-Major source of
Type I IFN
-Present in blood
and lymphoid
organs
Follicular DCs
-Contains Fc
receptors for IgG
and C3b (traps
antigens bound to
them)
-Present in germinal
center of lymphoid
follicle in spleen
and LN.

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The Immune System

(Protection from infectious pathogens) Responses of the Immune System

  1. Hypersensitivity Disorder: exagerrated response that may cause tissue injury.
  2. Tumor Immunity: response of the body against cancer cells.
  3. Rejection reaction on Tissue Transplants: response of the immune system (T cells and antibodies) against graft antigens.
  4. Autoimmunity: mistaken response of the immune system toward’s one’s antigens— recognizes self antigens as FOREIGN

Mechanisms of Immunity

Innate Immunity

Adaptive Immunity

CHARACTERISTICS

  • Natural/ native/ intrinsic (always present)
  • 1st line of defense (immediate)
  • Major Reaction: INFLAMMATION
  • Detects PAMPs
    • No memory or fine antigens

CHARACTERISTICS

  • Acquired/Specific (silent immunity)
  • Delayed defense mechanisms (may take time to respond)
  • Major Stimuli: Microbes and Foreign Bodies
  • Has memory (anamnestic response) or fine antigens

COMPONENTS

EPITHELIAL BARRIER

  • Mechanical barrier
  • Skin epithelium and mucosal membranes PHAGOCYTES
  • Phagocytosis in tissues
  • From YOLK SAC or FETAL LIVER
  • Macrophages (tissues):
    • Monocytes (blood)
    • Kupffer cells (liver)
    • Microglia (brain)
    • Alveolar macrophages/ Dust cells (lungs)
  • Polymorphonuclear cells (neutrophils) DENDRITIC CELLS
  • ANTIGEN-PRESENTING CELL
    • Presents only to T cells and are not involved in the destruction of microbes
  • Present in: epithelium, lymphoid organs (germinal center) and most tissues
  • Activation = cytokine secretion INNATE LYMPHOID CELLS (ILC)
  • Activated by cytokines and facilitate the production of more cytokines
  • No T-cell antigen receptors— cannot respond to antigens
  • Present in: Lymphoid tissues (MALT)
  • GROUPS ( based on patterns of cytokine production ): - ILC1: IFN-gamma - ILC2: Type-2 cytokines - ILC3: IL-22 and IL- NATURAL KILLER CELLS
  • TYPE OF ILC (Phenotypic, developmental, and functional properties overlap with ILC and ILC3)
  • Early protection against viruses, tumor cells, and intracellular bacteria
  • Recognizes and kills pathogen that are IgG- coated (has receptors for the Fc tail of IgG EPITHELIAL AND ENDOTHELIAL CELLS
  • Produce defensins (antimicrobial) PLASMA PROTEINS
  • Proteins of complement system
    • Mannose binding lectin and CRP
    • Alternative and lectin pathways (involved in innate immunity)
    • Classical Pathway (involved in adaptive immunity and antigen- antibody formation)
  • END RESULT: Activation of Membrane Attack Complex (MAC)

MAST CELLS

  • Found in: TISSUES
  • Basophil (circulation) counterpart
  • Produces mediators for inlammation (histamine)

LUNG SURFACTANTS

  • Prevents alveolar collapse (atelectasis) among newborns
  • Protection against inhaled microbes

COMPONENTS

Reactions of Innate Immunity

  • Inflammation (major)
    • Produce cytokines (interleukins) and complement products
    • Signal repair of damaged cells
    • Recruits leukocytes to destroy microbes and ingest damaged cells
  • Antiviral Defense
    • Produce Type I IFN and antiviral cytokines (NK cells)
    • Type I IFN: act on infected and uninfected cells and activate enzymes that degrade viral nucleic acid and inhibits replication
  • Stimulate Adaptive Immune Response - Initiates the more powerful immune response in case the innate immunity fails to eliminate the antigen.

CELLULAR RECEPTORS

PATHOGEN ASSOCIATED MOLECULAR PATTERNS (PAMPs)

  • Found and shared among related microbes.
  • Recognized by PRR-bearing cells and epithelial cells DAMAGE ASSOCIATED MOLECULAR PATTERNS (DAMPs)
  • Released by injured and necrotic cells.
  • Endogenous danger molecules PATTERN RECOGNITION RECEPTORS (PRRS)
  • Proteins capable of recognizing molecules found in pathogens
  • Found in all cellular compartments where microbes may be present.
  • Classifications:
    • Plasma membrane receptors: extracellular microbes
    • Endosomal receptors: intracellular/ ingested microbes
    • Cytosolic receptors: cytoplasmic microbes C-TYPE LECTIN RECEPTORS (CLRs)
  • Detect fungal glycans RIG-LIKE RECEPTORS (RLRs)
  • Stimulate production of antiviral cytokines CYTOSOLIC RECEPTORS
  • Detect microbial DNA (from viruses).
  • Activate STING (stimulator of interferon genes) pathways— production of IFN-ą (antiviral)
  • INTERFERONOPATHIES = mutation/ increased IFN production PLASMA MEMBRANE G PROTEIN-COUPLED RECEPTORS
  • Chemotaxis

MANNOSE RECEPTORS

  • Recognize microbial sugars
  • Induce phagocytosis of microbes TOLL-LIKE RECEPTORS (TLRs)
  • LOCATION: PLASMA MEMBRANE AND ENDOSOME
  • 10 TLRs in mammals— each recognizes a different set of molecules.
  • 1st recognized receptor in Drosophila
  • Induces activation of transcription factors
  • NF-KB (Nuclear Factor Kappa B):
  • (1) synthesis and secretion of cytokines;
  • (2) expression of adhesion molecules;
  • (3) both leads to recruitment and activation of leukocytes to the site of inflammation
  • IRFs (Interferon Regulatory Factors): for production of antiviral cytokines and Type I IFN
  • “Loss of function” mutation: problems with antiviral and antimicrobial functions of transcription factors NOD-LIKE RECEPTORS (NLRs)
  • LOCATION: CYTOSOL
  • Recognizes:
  • Necrotic cell products (uric acid and ATP)
  • Ion disturbances (K+ loss)
  • Microbial products
  • Signals inflammasome INFLAMMASOME
  • LOCATION: CYTOSOL
  • Cytosolic multiprotein complex
  • Components:
  • NLRP3: activates the inactive caspase-
  • Adapter
  • Caspase-1: cleave precursor of IL-
  • IL-1: induces fever and further leukocyte recruitment
  • NLR-Inflammasome Pathway
  • Periodic Fever Syndrome/ Autoinflammatory Syndrome
  • Not autoimmune; unregulated production of IL-
  • Causes: “Gain of function” (NLR mutation) and “Loss of function” (Inflammasome mutation)
  • Management: IL-1 antagonist
  • Gout
  • Obesity associated with T2DM and atherosclerosis NATURAL KILLER CELLS
  • 5-10% of circulating lymphocytes
  • Cell surface receptor: CD
  • Recognize microbial glycolipids displayed by CD
  • Function: ADCC; production of IFN-gamma (activates macrophages to destroy ingested microbes)
  • Regulation:
  • IL-2 and IL-15: Proliferation
  • IL-12: Activation and secretion of IFN-gamma Explanation of the picture:
  • Normal cells: no ligand expression; inhibitory receptor attached to MHC I = no activation of NK cells
  • Infected/tumor cells: expressed ligands on the surface and bound to activating receptor (green color); inhibitory receptor removed = activation of NK cells and killing of infected cells Lymphocytes and antibodies from plasma cells (B cells)

LYMPHOCYTES

Naive/Immunologically

inexperienced

  • Mature lymphocytes that haven’t encountered an antigen YET.
  • LOCATION: PERIPHERY of primary lymphoid organs and primary follicles (without germinal centers) in lymph nodes

Effector Cells

  • For elimination of microorganism

Memory Cells

  • Undergone activation BEFORE
  • Under the state of heightened awareness (react rapidly and strongly in cases of microbial re-encounter)

B Lymphocyte

  • Production of antibodies (plasma cells)
  • Neutralization of microbes
  • Phagocytosis
  • Complement activation T Lymphocyte
  • Major lymphocyte in splenic periarteriolar sheaths and lymph node interfollicular zones
  • Sense peptide fragments bound by MHC ONLY. Helper T Lymphocyte (CD4)
  • Binds to MHC Class II (APC cells only)
  • 50-60% of T cells
  • Releases cytokines and induces inflammation
  • Activates macrophages (phagocytes)
  • Activation (proliferation and differentiation) of T and B lymphocytes

Cytotoxic T Lymphocyte (CD8)

  • Binds to MHC Class I (seen in all nucleated cells + platelets)
  • 40% of T cells
  • Also secrete cytokines
    • Direct killing and lysis of infected/tumor cells and microbes

Regulatory T Lymphocyte (CD4)

  • SUPPRESSION of immune system
    • Prevention of autoimmunity

Lymphocyte Diversity

  • Lymphocytes express receptors specific for different types of antigens and are fully matured prior to exposure to antigen
  • Clone: lymphocytes of the SAME SPECIFICITY (express the same antigen receptors)
  • Clonal selection: process by which a single lymphocyte bearing a receptor specific to a particular antigen is selected to proliferate and form clones. Antigen Receptor Diversity
  • Recombination-activating genes (RAG-1 and RAG-2): encode for enzymes found in developing lymphocytes (only contained by T and B cell)
  • Defects in RAG proteins = failure to generate mature lymphocytes
  • Recombined TCR or Ig genes: marker to differentiate T- or B-cell lineage cells
  • Lymphomas:
  • Polyclonal (non-neoplastic or reactive): combination of CD3 (T cells) and CD20 (B cells)
  • Monoclonal (neoplastic): entire lymph node is composed of one cell type only (CD3 OR CD20)

T Lymphocytes

Thymus-derived

  • 60-70% of circulating lymphocytes
  • Located in T cell zones of secondary lymphoid organs: Paracortex (LN) and spleen
  • Recognizes a specific antigen by means of antigen-specific TCR
  • CD4, CD8, CD28, and integrins: expressed by T cells and assist the TCR complex in functional responses
  • TCR COMPLEX: has 6 polypeptide chains
  • Alpha and beta chains
  • Variable and constant regions
  • Alpha-beta TCR: recognize peptide antigens presented by MHC molecules.
  • CD3 complex: epsilon, gamma, delta proteins
  • Zeta chain dimer: involve in the signal transduction into the T cell once antigen binds to the TCR
  • Gamma-delta TCR: recognizes peptides, lipids, and small molecules without requiring for display by MHC proteins.

CD

  • Receptor for co-stimulators that are induced on APCs

B Lymphocytes

Bone marrow-derived

  • 10-20% of circulating lymphocytes
  • Located in peripheral lymphoid tissues such as lymph nodes, spleen, and MALT
  • Activation = differentiation into plasma cells = secretion of antibodies = mediation of humoral immunity 5 Classes of Antibodies
  • IgG (able to cross the placenta)
  • IgM (largest— a pentamer)
  • IgA (found in secretions and serum)
  • IgE (mostly located in mast cells)
  • IgD (found on B cell surface)
  • BCR COMPLEX: antigen recognition receptor for B cells.
  • Comprised of:
  • Membrane Immunoglobulin (IgM, IgG, IgA): for antigen and signaling proteins recognition
  • Signaling proteins (Igą/CD79a, Igß/ CD79b): attached to BCR
  • Type 2 complement receptor (CR2/ CD21): for B cell activation and recognition of complement breakdown products deposited on microbes - Helps EBV enter and infect the cell
  • CD40: receives signals from helper T cells for activation of B cells.

TYPES OF ADAPTIVE

IMMUNITY

• HUMORAL

  • Targets extracellular pathogens and their toxins
  • Mediated by antibodies produced by B cells
  • CELL-MEDIATED
  • Targets intracellular pathogens and tumor infected cells
  • Mediated by T cells

Antigen-Presenting

Dendritic Cells^ Cells

Interdigitating DCs

  • Most important APC for initiating T-cell responses
  • Langerhans cells: immature DC in epidermis
  • Brings antigen to paracortex and follicular area/germinal center of lymphoid organs
  • LOCATIONS: skin epithelium and tissue interstitium
  • Receptors: TLRs and C- type lectins
  • Express high levels of MHC Cells with Dendritic- Like Morphology
  • Plasmacytoid DCs
  • Has plasma cells resemblance
  • Major source of Type I IFN
  • Present in blood and lymphoid organs
  • Follicular DCs
  • Contains Fc receptors for IgG and C3b (traps antigens bound to them)
  • Present in germinal center of lymphoid follicle in spleen and LN.